PDBsum entry 2j04 Go to PDB code:  Pore analysis for: 2j04 calculated with MOLE 2.0 PDB id 2j04 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   12 pores, coloured by radius 12 pores, coloured by radius 12 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.20 2.43 28.7 -1.26 -0.43 10.1 82 2 1 4 2 2 0 0   2 1.15 1.42 46.2 -1.76 -0.50 24.2 87 7 5 6 4 1 1 0   3 1.25 1.48 58.4 -1.65 -0.29 19.6 78 3 6 5 3 6 0 0   4 1.46 2.29 66.2 -1.80 -0.33 19.9 81 5 6 7 4 5 1 0   5 1.30 1.48 143.2 -1.69 -0.34 21.3 80 15 10 9 8 5 5 1   6 1.32 1.49 147.1 -0.55 -0.08 18.9 86 11 6 5 17 3 0 0   7 1.26 1.47 167.6 -1.77 -0.38 19.7 82 12 11 12 8 4 3 1   8 1.24 1.22 183.1 -0.96 -0.31 18.3 86 12 7 8 14 3 1 0   9 1.11 1.11 177.4 -0.97 -0.20 15.1 76 7 5 4 9 7 2 0   10 1.08 1.47 221.1 -1.30 -0.27 17.0 82 13 7 10 6 8 3 0   11 1.22 1.38 234.2 -0.99 -0.26 17.5 84 14 8 10 13 6 1 0   12 1.09 1.47 288.6 -1.00 -0.23 18.6 82 15 12 9 13 6 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.