spacer
spacer

PDBsum entry 2hhd

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 2hhd calculated with MOLE 2.0 PDB id
2hhd
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
3 pores, coloured by radius 3 pores, coloured by radius 3 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.31 1.32 69.7 0.01 -0.04 12.4 84 5 1 2 11 1 3 0  HEM 148 B
2 1.51 1.50 84.0 -1.04 -0.31 19.4 86 10 5 3 11 1 2 0  
3 1.39 1.35 96.0 -0.67 -0.16 19.2 82 11 5 3 15 2 1 0  HEM 148 B

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer