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PDBsum entry 2gyb
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Tunnel analysis for: 2gyb calculated with  MOLE 2.0
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PDB id
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2gyb
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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6 tunnels,
coloured by tunnel radius |
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6 tunnels,
coloured by
tunnel radius
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6 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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2.28 |
2.28 |
15.3 |
-0.40 |
-0.80 |
3.4 |
0 |
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0 |
0 |
0 |
0 |
0 |
0 |
0 |
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A 21 W U 47 W C 49 W U 50 W G 51 W U 52 W A 58 W
U 59 W C 60 W
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2 |
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2.40 |
2.40 |
16.5 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
U 6 W U 7 W G 15 W U 16 W C 49 W U 50 W U 59 W C
60 W
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3 |
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2.42 |
2.42 |
17.8 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
G 4 W A 5 W U 7 W C 49 W U 50 W C 60 W C 61 W A
62 W C 63 W
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4 |
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1.71 |
1.71 |
26.5 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
U 6 W U 7 W G 15 W U 16 W C 49 W U 50 W U 52 W G
53 W A 58 W U 59 W C 60 W C 61 W
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5 |
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1.68 |
1.68 |
26.7 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
G 4 W A 5 W U 7 W C 49 W U 50 W G 51 W U 52 W G
53 W A 58 W U 59 W C 60 W C 61 W A 62 W C 63 W
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6 |
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1.20 |
1.20 |
15.4 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
U 7 U U 8 U A 9 U G 10 U C 11 U U 12 U U 68 U
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program