 |
PDBsum entry 2gx2
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 2gx2 calculated with  MOLE 2.0
|
PDB id
|
|
|
|
2gx2
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
11 tunnels,
coloured by tunnel radius |
|
24 tunnels,
coloured by
tunnel radius
|
24 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.26 |
2.69 |
32.9 |
-3.00 |
-0.79 |
29.1 |
90 |
|
4 |
6 |
6 |
0 |
0 |
0 |
0 |
|
MG 3004 C MG 3014 C MG 3008 F
|
 |
|
2 |
 |
1.40 |
2.60 |
33.0 |
-2.91 |
-0.77 |
28.1 |
85 |
4 |
6 |
5 |
0 |
0 |
2 |
0 |
MG 3027 A MG 3031 A MG 3028 L
|
|
3 |
 |
1.21 |
2.75 |
33.0 |
-2.99 |
-0.80 |
28.7 |
87 |
5 |
7 |
6 |
0 |
0 |
1 |
0 |
MG 3004 C
|
|
4 |
 |
1.35 |
1.62 |
33.4 |
-3.05 |
-0.79 |
28.5 |
89 |
5 |
6 |
6 |
0 |
0 |
0 |
0 |
MG 3004 C MG 3014 C MG 3008 F
|
|
5 |
 |
1.40 |
2.60 |
35.5 |
-3.00 |
-0.80 |
26.2 |
87 |
5 |
5 |
6 |
0 |
0 |
1 |
0 |
MG 3036 K MG 3034 L
|
|
6 |
 |
1.27 |
2.72 |
40.2 |
-3.18 |
-0.80 |
30.4 |
86 |
6 |
9 |
6 |
1 |
0 |
0 |
0 |
MG 3043 B MG 3044 B MG 3012 C
|
|
7 |
 |
1.30 |
2.69 |
41.7 |
-2.60 |
-0.56 |
26.2 |
85 |
5 |
5 |
4 |
2 |
1 |
1 |
0 |
MG 3014 C MG 3008 F
|
|
8 |
 |
1.37 |
1.64 |
41.8 |
-3.05 |
-0.80 |
28.8 |
85 |
7 |
9 |
6 |
1 |
0 |
0 |
0 |
MG 3043 B MG 3044 B MG 3012 C
|
|
9 |
 |
1.35 |
1.63 |
42.3 |
-2.65 |
-0.58 |
26.9 |
85 |
6 |
5 |
4 |
2 |
1 |
1 |
0 |
MG 3014 C MG 3008 F
|
|
10 |
 |
1.18 |
2.79 |
42.4 |
-2.53 |
-0.67 |
24.6 |
85 |
6 |
4 |
5 |
2 |
1 |
1 |
0 |
MG 3046 B
|
|
11 |
 |
1.41 |
2.60 |
42.8 |
-2.27 |
-0.60 |
23.4 |
85 |
6 |
4 |
4 |
2 |
1 |
1 |
0 |
MG 3028 L
|
|
12 |
|
1.35 |
1.62 |
43.0 |
-2.53 |
-0.64 |
25.2 |
85 |
5 |
5 |
4 |
2 |
1 |
1 |
0 |
|
|
13 |
|
1.26 |
2.72 |
42.9 |
-2.93 |
-0.71 |
28.4 |
85 |
5 |
7 |
5 |
2 |
0 |
1 |
0 |
MG 3043 B MG 3044 B MG 3012 C
|
|
14 |
|
1.26 |
2.70 |
43.0 |
-2.41 |
-0.65 |
23.0 |
85 |
6 |
4 |
5 |
2 |
1 |
1 |
0 |
MG 3046 B MG 3008 F
|
|
15 |
|
1.20 |
2.68 |
43.1 |
-3.10 |
-0.80 |
29.1 |
85 |
8 |
9 |
6 |
1 |
0 |
0 |
0 |
MG 3043 B MG 3044 B MG 3012 C
|
|
16 |
|
1.33 |
1.51 |
43.6 |
-2.57 |
-0.69 |
23.4 |
86 |
7 |
4 |
5 |
2 |
0 |
1 |
0 |
MG 3046 B MG 3008 F
|
|
17 |
|
1.27 |
2.73 |
44.3 |
-2.61 |
-0.64 |
25.3 |
85 |
6 |
5 |
4 |
2 |
1 |
1 |
0 |
MG 3012 C
|
|
18 |
|
1.22 |
2.68 |
44.3 |
-2.67 |
-0.64 |
26.4 |
85 |
6 |
5 |
4 |
2 |
1 |
1 |
0 |
|
|
19 |
|
1.39 |
1.65 |
44.5 |
-2.84 |
-0.72 |
27.0 |
85 |
6 |
7 |
5 |
2 |
0 |
1 |
0 |
MG 3043 B MG 3044 B MG 3012 C
|
|
20 |
|
1.24 |
2.74 |
45.1 |
-2.45 |
-0.64 |
25.9 |
87 |
6 |
4 |
4 |
2 |
0 |
1 |
0 |
|
|
21 |
|
1.20 |
2.76 |
45.1 |
-2.43 |
-0.56 |
24.9 |
84 |
7 |
5 |
4 |
2 |
1 |
1 |
0 |
MG 3014 C MG 3008 F
|
|
22 |
|
1.20 |
2.94 |
45.3 |
-2.68 |
-0.65 |
25.5 |
85 |
6 |
4 |
5 |
2 |
1 |
1 |
0 |
|
|
23 |
|
1.40 |
2.62 |
49.2 |
-2.35 |
-0.53 |
26.9 |
85 |
8 |
4 |
5 |
3 |
1 |
1 |
0 |
MG 3028 L
|
 |
24 |
|
1.28 |
1.37 |
22.6 |
-0.70 |
0.12 |
10.5 |
73 |
2 |
1 |
0 |
4 |
3 |
0 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program