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PDBsum entry 2gv4

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Tunnel analysis for: 2gv4 calculated with MOLE 2.0 PDB id
2gv4
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 2.01 11.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  4 C A,5 C A,6 U A,7 C A,13 A A,14 G A,19 G A
2 2.05 13.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  5 C A,6 U A,7 C A,10 G A,13 A A,14 G A,19 G A
3 2.24 13.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  2 G A,3 A A,4 C A,5 C A,6 U A,7 C A,15 A A,16 G A,
17 U A,19 G A
4 2.15 14.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  2 G A,3 A A,4 C A,5 C A,6 U A,7 C A,14 G A,15 A A,
16 G A,19 G A
5 2.24 21.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  1 G A,2 G A,4 C A,5 C A,6 U A,7 C A,15 A A,16 G A,
17 U A,18 G A,19 G A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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