PDBsum entry 2gl9 Go to PDB code:  Tunnel analysis for: 2gl9 calculated with MOLE 2.0 PDB id 2gl9 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.41 1.41 16.0 -0.86 -0.39 20.9 79 4 2 0 3 0 0 1   2 1.71 1.71 21.0 -2.00 -0.69 28.8 75 6 4 0 1 0 0 2   3 1.29 1.67 17.5 -0.27 -0.43 6.7 84 2 1 2 0 1 0 2  NAG 596 C ASN 597 D 4 1.30 1.68 17.7 -0.22 -0.45 6.0 84 2 1 2 0 1 0 2  NAG 596 C ASN 597 D 5 1.41 1.48 17.3 -0.17 0.16 24.0 89 2 2 0 4 0 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.