PDBsum entry 2gi4

Tunnel analysis for: 2gi4 calculated with

MOLE 2.0

PDB id

2gi4

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

5 tunnels, coloured by tunnel radius

5 tunnels, coloured by tunnel radius

5 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.20

1.49

20.8

1.00

0.24

7.4

78

2

1

2

6

1

0

2

2

1.21

1.47

21.6

0.87

0.22

8.1

83

2

1

3

6

1

0

2

3

1.09

1.65

22.8

1.76

0.60

4.0

77

2

0

1

7

1

0

2

4

1.16

2.35

25.2

0.56

0.25

6.9

86

1

1

4

8

2

0

1

5

1.08

1.65

27.3

1.16

0.53

4.1

86

1

0

3

9

2

0

1

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.