spacer
spacer

PDBsum entry 2gfq

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 2gfq calculated with MOLE 2.0 PDB id
2gfq
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
1 pore, coloured by radius 4 pores, coloured by radius 4 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.35 1.59 26.2 -0.45 -0.04 12.1 82 3 3 2 1 5 0 0  MSE 53 C
2 1.25 1.58 47.2 -2.69 -0.58 32.0 78 5 2 2 1 2 0 0  MSE 14 C MSE 17 C SO4 2011 C
3 1.44 2.10 197.2 -1.82 -0.38 22.9 76 13 10 9 6 7 1 0  MSE 101 B SO4 2007 B SO4 2014 B
4 2.00 2.64 214.7 -1.77 -0.34 24.4 78 13 11 8 6 10 2 0  MSE 53 A MSE 101 A SO4 2012 A SO4 2007 B

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer