PDBsum entry 2gfb Go to PDB code:  Pore analysis for: 2gfb calculated with MOLE 2.0 PDB id 2gfb Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   43 pores, coloured by radius 43 pores, coloured by radius 43 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.85 3.28 26.0 -2.76 -0.72 34.4 82 4 3 2 1 0 1 0   2 3.42 4.25 27.7 -0.46 -0.58 5.7 97 2 1 4 3 0 0 0   3 2.54 2.60 29.3 -2.28 -0.53 26.2 87 4 3 4 1 1 1 0   4 3.54 3.54 31.7 -1.34 -0.56 16.6 76 0 4 0 3 2 2 0   5 4.54 4.54 33.7 -1.30 -0.72 9.9 96 3 3 7 1 0 0 0   6 1.36 2.65 35.2 -2.14 -0.69 23.1 83 3 2 2 2 0 0 0   7 3.41 3.57 37.3 -1.14 -0.22 9.0 80 4 0 1 1 2 1 0   8 2.49 2.52 47.2 -1.40 -0.48 11.3 89 4 1 5 2 3 1 0   9 3.82 3.91 48.5 -1.76 -0.46 16.0 83 5 3 5 2 3 2 0   10 2.83 3.00 48.6 -1.09 -0.34 10.5 79 2 3 2 1 2 3 0   11 3.65 3.64 49.4 -1.78 -0.53 17.1 83 5 3 5 2 2 3 0   12 2.17 2.33 51.6 -1.56 -0.65 14.8 94 4 3 9 2 1 1 0   13 3.46 3.53 56.7 -1.48 -0.61 19.1 81 2 6 4 4 3 3 0   14 2.81 2.98 57.2 -1.01 -0.13 10.5 69 1 3 1 2 5 4 0   15 2.54 2.61 57.4 -2.17 -0.60 21.2 91 6 3 10 1 2 1 0   16 3.41 3.57 58.6 -1.09 -0.31 10.8 84 7 0 5 4 2 1 0   17 3.42 3.42 62.1 -1.01 -0.51 11.6 77 3 4 2 4 4 4 0   18 4.14 4.78 62.5 -1.66 -0.51 14.1 91 5 2 8 2 2 1 0   19 3.65 3.64 64.2 -1.88 -0.59 15.3 88 6 3 8 2 2 2 0   20 3.30 3.49 64.3 -1.83 -0.58 19.9 81 4 7 5 1 3 1 0   21 3.48 3.52 64.5 -1.67 -0.63 18.0 88 3 6 7 4 3 1 0   22 2.20 2.33 66.8 -1.62 -0.69 13.1 98 5 3 12 2 1 0 0   23 2.79 2.96 68.7 -0.95 -0.20 12.8 78 3 3 4 5 4 3 0   24 3.41 3.51 69.8 -1.35 -0.44 13.7 79 4 4 3 5 5 3 0   25 1.07 1.35 74.5 -2.19 -0.62 24.2 85 7 8 8 3 1 3 0   26 3.48 3.52 75.2 -1.46 -0.54 17.5 83 4 5 5 5 3 2 0   27 3.64 3.64 78.1 -1.64 -0.34 11.7 87 4 3 9 2 4 2 0   28 3.41 3.57 80.4 -1.48 -0.32 11.9 82 4 3 7 2 4 3 0   29 3.51 3.52 28.0 -1.40 -0.56 17.8 77 0 4 0 3 2 1 0   30 4.28 4.27 32.6 -1.14 -0.67 9.2 96 3 2 6 1 0 0 0   31 2.75 3.68 46.3 -1.87 -0.57 22.9 78 4 6 2 3 2 3 0   32 2.82 3.64 59.7 -1.22 -0.51 10.9 76 4 4 2 4 4 4 0   33 2.98 3.31 60.0 -1.79 -0.67 19.0 87 3 6 7 3 3 2 0   34 3.52 3.72 62.4 -1.40 -0.58 17.6 85 2 5 6 5 2 1 0   35 3.62 3.63 63.4 -1.75 -0.59 13.2 89 6 2 8 2 2 2 0   36 2.81 3.84 65.7 -1.86 -0.61 22.9 80 3 9 6 5 3 5 0   37 2.81 3.66 67.3 -1.61 -0.59 18.6 81 4 6 5 5 3 2 0   38 3.26 4.53 68.3 -1.94 -0.52 20.3 81 7 6 7 3 2 5 0   39 1.20 2.52 69.7 -1.36 -0.48 13.2 88 4 3 6 2 2 2 0   40 2.05 2.25 85.9 -1.13 -0.60 11.6 96 5 2 9 5 1 0 0   41 2.07 2.24 96.0 -1.83 -0.66 19.1 86 10 7 8 2 1 3 0   42 2.04 2.25 104.2 -1.81 -0.67 17.7 92 9 5 11 3 1 1 0   43 2.04 2.24 113.0 -1.83 -0.57 19.0 85 9 6 8 5 4 3 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.