PDBsum entry 2gdv Go to PDB code:  Pore analysis for: 2gdv calculated with MOLE 2.0 PDB id 2gdv Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 pores, coloured by radius 3 pores, coloured by radius 3 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.14 3.12 32.3 -0.96 -0.62 5.9 88 1 1 4 3 0 2 0   2 2.52 3.50 32.8 -0.84 -0.50 5.5 76 1 0 4 3 1 4 0   3 2.13 3.11 43.1 -1.18 -0.35 8.1 78 2 1 4 4 1 4 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.