 |
PDBsum entry 2gdi
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 2gdi calculated with  MOLE 2.0
|
PDB id
|
|
|
|
2gdi
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
20 tunnels,
coloured by tunnel radius |
|
19 tunnels,
coloured by
tunnel radius
|
19 tunnels,
coloured as in
list below
|
|
|
|
|
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
Hydropathy
|
|
|
|
|
|
|
Hydrophobicity
|
|
|
|
|
|
|
Polarity
|
|
|
|
|
|
|
Mutability
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.85 |
21.2 |
-0.40 |
-0.80 |
3.4 |
0 |
|
0 |
0 |
0 |
0 |
0 |
0 |
0 |
|
19 G Y,20 U Y,40 G Y,41 A Y,42 G Y,43 A Y,55 C Y,
57 C Y,72 G Y,73 C Y,74 C Y,75 A Y,100 TPP Y,113
MG Y
|
 |
|
2 |
 |
1.85 |
25.0 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
19 G Y,20 U Y,42 G Y,43 A Y,55 C Y,57 C Y,72 G Y,
73 C Y,74 C Y,75 A Y,76 G Y,78 G Y,100 TPP Y,112
MG Y
|
|
3 |
 |
1.61 |
33.3 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
19 G Y,20 U Y,42 G Y,43 A Y,57 C Y,58 C Y,59 U Y,
60 G Y,61 A Y,62 U Y,72 G Y,73 C Y,74 C Y,78 G Y,
100 TPP Y,111 MG Y,112 MG Y
|
|
4 |
 |
1.84 |
22.6 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
19 G X,20 U X,40 G X,41 A X,42 G X,43 A X,55 C X,
57 C X,72 G X,74 C X,75 A X,100 TPP X,103 MG X
|
|
5 |
 |
1.85 |
25.4 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
19 G X,20 U X,42 G X,43 A X,57 C X,58 C X,59 U X,
72 G X,100 TPP X
|
|
6 |
 |
1.84 |
29.1 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
19 G X,20 U X,42 G X,43 A X,54 U X,55 C X,57 C X,
72 G X,74 C X,75 A X,76 G X,78 G X,79 U X,100 TPP
X,102 MG X
|
|
7 |
 |
1.85 |
34.1 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
19 G X,20 U X,22 C X,42 G X,43 A X,57 C X,58 C X,
59 U X,60 G X,61 A X,62 U X,72 G X,78 G X,100 TPP
X,101 MG X,102 MG X,121 NA X,123 K X
|
|
8 |
 |
3.19 |
11.8 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
21 G Y,22 C Y,23 C Y,32 U Y,33 G Y,34 A Y,35 A Y,
36 G Y
|
|
9 |
 |
2.08 |
12.6 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
34 A Y,35 A Y,36 G Y,37 G Y,43 A Y,44 A Y
|
|
10 |
 |
2.05 |
13.4 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
34 A Y,35 A Y,36 G Y,44 A Y,45 A Y
|
|
11 |
 |
3.44 |
13.5 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
22 C Y,23 C Y,31 G Y,32 U Y,33 G Y,34 A Y,35 A Y,
36 G Y
|
|
12 |
|
2.18 |
15.7 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
23 C Y,24 C Y,25 U Y,26 U Y,30 C Y,31 G Y,34 A Y,
35 A Y,36 G Y
|
|
13 |
|
1.28 |
7.4 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
31 G X,32 U X,28 U Y,29 G Y,30 C Y
|
|
14 |
|
1.58 |
11.3 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
28 U X,29 G X,30 C X,31 G X,28 U Y,31 G Y,33 G Y
|
|
15 |
|
1.42 |
11.5 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
28 U X,29 G X,30 C X,31 G X,31 G Y,32 U Y,33 G Y
|
|
16 |
|
1.42 |
13.2 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
28 U X,29 G X,30 C X,31 G X,32 U X,28 U Y,29 G Y
|
|
17 |
|
1.29 |
13.3 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
28 U X,29 G X,31 G X,28 U Y,29 G Y,30 C Y,31 G Y,
33 G Y
|
|
18 |
|
1.42 |
13.5 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
27 C X,28 U X,29 G X,30 C X,31 G X,33 G X,28 U Y
|
 |
19 |
|
1.28 |
15.3 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
27 C X,28 U X,29 G X,31 G X,33 G X,28 U Y,29 G Y,
30 C Y
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program