 |
PDBsum entry 2g0d
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 2g0d calculated with  MOLE 2.0
|
PDB id
|
|
|
|
2g0d
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
6 tunnels,
coloured by tunnel radius |
|
6 tunnels,
coloured by
tunnel radius
|
6 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.15 |
1.84 |
29.4 |
-0.42 |
0.17 |
12.9 |
73 |
|
2 |
2 |
1 |
4 |
5 |
0 |
0 |
|
|
 |
|
2 |
 |
1.17 |
1.36 |
24.1 |
1.11 |
0.19 |
5.5 |
74 |
1 |
1 |
1 |
9 |
1 |
0 |
0 |
|
|
3 |
 |
1.22 |
2.10 |
17.3 |
0.05 |
0.33 |
12.4 |
62 |
1 |
1 |
0 |
4 |
3 |
0 |
0 |
|
|
4 |
 |
1.20 |
1.99 |
18.1 |
-0.25 |
0.21 |
17.4 |
70 |
1 |
1 |
0 |
3 |
2 |
0 |
0 |
|
|
5 |
 |
2.12 |
2.27 |
15.3 |
-2.09 |
-0.75 |
21.6 |
86 |
1 |
1 |
2 |
0 |
0 |
0 |
0 |
|
 |
6 |
 |
1.51 |
1.57 |
18.4 |
-1.78 |
-0.82 |
19.6 |
84 |
1 |
2 |
1 |
0 |
0 |
0 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program