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PDBsum entry 2fyy

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Immune system PDB id
2fyy
Contents
Protein chains
276 a.a.
99 a.a.
Ligands
HIS-PRO-VAL-GLY
PHE-GLU-TYR
Waters ×295

References listed in PDB file
Key reference
Title Tcr alpha genes direct mhc restriction in the potent human t cell response to a class i-Bound viral epitope.
Authors J.J.Miles, N.A.Borg, R.M.Brennan, F.E.Tynan, L.Kjer-Nielsen, S.L.Silins, M.J.Bell, J.M.Burrows, J.Mccluskey, J.Rossjohn, S.R.Burrows.
Ref. J Immunol, 2006, 177, 6804-6814.
PubMed id 17082594
Abstract
The underlying generic properties of alphabeta TCRs that control MHC restriction remain largely unresolved. To investigate MHC restriction, we have examined the CTL response to a viral epitope that binds promiscuously to two human leukocyte Ags (HLAs) that differ by a single amino acid at position 156. Individuals expressing either HLA-B*3501 (156Leucine) or HLA-B*3508 (156Arginine) showed a potent CTL response to the 407HPVGEADYFEY417 epitope from EBV. Interestingly, the response was characterized by highly restricted TCR beta-chain usage in both HLA-B*3501+ and HLA-B*3508+ individuals; however, this conserved TRBV9+ beta-chain was associated with distinct TCR alpha-chains depending upon the HLA-B*35 allele expressed by the virus-exposed host. Functional assays confirmed that TCR alpha-chain usage determined the HLA restriction of the CTLs. Structural studies revealed significant differences in the mobility of the peptide when bound to HLA-B*3501 or HLA-B*3508. In HLA-B*3501, the bulged section of the peptide was disordered, whereas in HLA-B*3508 the bulged epitope adopted an ordered conformation. Collectively, these data demonstrate not only that mobile MHC-bound peptides can be highly immunogenic but can also stimulate an extremely biased TCR repertoire. In addition, TCR alpha-chain usage is shown to play a critical role in controlling MHC restriction between closely related allomorphs.
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