PDBsum entry 2fyp Go to PDB code:  Tunnel analysis for: 2fyp calculated with MOLE 2.0 PDB id 2fyp Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.15 1.36 19.0 0.73 0.48 11.3 87 2 0 3 4 1 0 0  1PE 601 B 2 1.16 1.44 25.4 -0.41 -0.03 16.1 85 3 2 3 5 1 0 0  1PE 601 B 3 1.15 1.38 25.7 -1.14 -0.28 9.9 90 2 0 4 6 1 0 0  1PE 601 B 4 1.42 1.42 18.8 -0.34 -0.14 14.2 95 1 2 2 7 0 0 0  RDE 1002 B 5 1.29 2.55 21.2 -0.59 -0.25 14.2 95 1 2 1 6 0 0 0  PG4 507 B RDE 1002 B 6 1.42 1.42 23.4 -0.88 -0.27 13.4 92 2 1 2 8 0 0 0  PG4 507 B RDE 1002 B 7 1.65 2.07 21.6 -0.88 -0.21 14.1 94 1 2 2 5 0 0 0  RDE 1001 A 8 1.40 1.40 25.2 -0.55 -0.18 13.7 95 1 2 2 6 0 0 0  RDE 1001 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.