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PDBsum entry 2fr4

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Top Page protein dna_rna ligands Protein-protein interface(s) pores links
Pore analysis for: 2fr4 calculated with MOLE 2.0 PDB id
2fr4
Pores calculated on whole structure Pores calculated excluding ligands

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5 pores, coloured by radius 5 pores, coloured by radius 5 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.52 2.52 34.7 -1.61 -0.16 6.6 68 1 0 2 0 5 2 0  DG 7 M DC 8 M DC 9 M DT 6 N DG 7 N DC 8 N DC 9 N
2 2.27 2.27 35.8 -1.61 -0.17 7.0 65 1 1 2 0 5 2 0  DC 5 M DT 6 M DG 7 M DC 8 M DC 9 M DT 6 N DG 7 N
DC 8 N DC 9 N
3 1.12 1.34 37.8 -1.71 -0.01 6.8 62 1 0 2 0 7 2 0  DG 7 M DC 8 M DC 9 M DG 7 N DC 8 N DC 9 N DT 10 N
4 2.82 3.10 47.2 -1.61 -0.68 12.9 83 3 2 6 2 1 1 0  
5 1.60 1.57 75.8 -1.45 -0.68 8.0 91 2 1 6 2 1 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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