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PDBsum entry 2fld

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Top Page protein dna_rna metals Protein-protein interface(s) pores links
Pore analysis for: 2fld calculated with MOLE 2.0 PDB id
2fld
Pores calculated on whole structure Pores calculated excluding ligands

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6 pores, coloured by radius 6 pores, coloured by radius 6 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.38 1.57 26.3 -1.32 -0.60 20.3 77 4 2 0 2 0 0 0  DG 511 C DT 512 C DG 513 C DG 565 D DA 566 D DC
567 D DC 568 D
2 1.41 1.44 30.3 -1.57 -0.54 19.1 74 5 1 2 2 1 0 0  DG 511 C DT 512 C DG 513 C DA 514 C DG 565 D DA
566 D DC 567 D DC 568 D
3 1.22 1.22 47.9 -1.54 -0.66 18.4 70 4 2 0 1 1 0 0  DA 506 C DG 507 C DG 511 C DT 512 C DG 513 C DA
514 C DG 515 C DA 516 C DA 563 D DC 564 D DG 565
D DA 566 D DC 567 D DC 568 D
4 1.19 1.19 52.5 -1.57 -0.58 20.6 75 6 2 0 2 1 0 0  DA 506 C DG 507 C DG 511 C DG 513 C DA 514 C DG
515 C DA 516 C DA 563 D DC 564 D DG 565 D DA 566 D
5 1.54 1.54 39.3 -0.76 -0.24 11.3 91 2 0 3 2 1 0 0  DT 520 C DT 521 C DC 522 C DG 553 D DA 554 D DA
555 D DC 556 D
6 1.40 1.47 44.8 -0.51 -0.13 11.4 80 3 0 3 4 1 1 0  DC 518 C DG 519 C DA 555 D DC 556 D DG 557 D

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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