PDBsum entry 2fe8

Pore analysis for: 2fe8 calculated with

MOLE 2.0

PDB id

2fe8

Pores calculated on whole structure

Pores calculated excluding ligands

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without HETATM:

9 pores, coloured by radius

13 pores, coloured by radius

13 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.14

1.78

28.4

-0.75

-0.11

7.8

77

3

0

3

2

2

0

1

2

1.54

2.01

31.1

-1.10

-0.02

16.2

75

4

2

1

2

3

0

1

3

2.27

2.69

41.4

-2.61

-0.51

28.5

88

7

6

4

0

1

0

0

SO4 320 B

4

1.25

2.52

44.0

-1.40

-0.22

19.7

74

3

5

3

5

3

0

1

5

1.58

2.95

48.9

-1.60

-0.18

18.6

73

4

5

1

2

2

4

2

6

2.53

4.42

49.4

-2.44

-0.50

27.4

87

8

6

4

0

1

0

0

SO4 320 C

7

2.54

3.74

52.3

-2.57

-0.57

22.5

97

8

5

10

0

0

0

0

SO4 320 B SO4 320 C

8

1.50

2.76

57.9

-2.70

-0.55

24.9

86

8

7

7

0

2

0

0

SO4 320 A

9

1.48

2.76

71.7

-2.27

-0.36

28.4

85

8

4

3

0

2

0

0

SO4 320 A

10

2.02

3.54

96.0

-2.39

-0.49

20.8

91

12

6

8

0

1

0

0

SO4 320 A SO4 320 B

11

1.81

2.87

159.7

-2.05

-0.57

17.3

90

11

11

15

4

2

0

0

SO4 320 A SO4 320 B

12

1.74

3.01

170.6

-2.10

-0.57

18.9

89

12

12

15

4

3

1

0

SO4 320 A SO4 320 C

13

1.28

2.59

185.1

-1.89

-0.48

18.4

84

11

13

15

9

4

1

1

SO4 320 A

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.