PDBsum entry 2fdc

Pore analysis for: 2fdc calculated with

MOLE 2.0

PDB id

2fdc

Pores calculated on whole structure

Pores calculated excluding ligands

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without HETATM:

8 pores, coloured by radius

10 pores, coloured by radius

10 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

2.01

2.02

29.8

-0.34

-0.03

19.1

83

3

2

1

3

1

1

0

DT 5 C DT 13 C DA 14 C FLQ 473 C

2

2.40

2.54

30.5

-1.57

-0.25

29.1

78

4

3

3

3

1

1

0

DT 5 C DT 13 C FLQ 473 C

3

1.18

1.49

32.4

-1.06

-0.33

22.4

84

4

4

2

5

0

0

0

4

1.16

1.48

45.1

-1.13

-0.43

21.2

84

3

6

2

7

0

0

0

DA 14 C

5

1.21

1.51

45.4

-1.11

-0.21

20.8

83

4

5

2

5

1

1

0

DT 5 C DT 13 C FLQ 473 C

6

1.24

1.28

148.7

-1.63

-0.53

21.3

83

8

11

5

6

3

1

0

DC 1 C DG 2 C DG 3 C DC 4 C DT 5 C DT 13 C DA 14
C DC 16 C DG 17 C DC 18 C DA 19 C FLQ 473 C

7

1.24

1.28

152.9

-1.93

-0.59

23.5

79

8

8

4

3

4

2

0

DC 1 C DG 2 C DG 3 C DC 4 C DT 5 C DT 13 C DC 16
C DG 17 C DC 18 C DA 19 C FLQ 473 C

8

1.24

1.28

164.3

-1.21

-0.50

15.5

80

7

6

5

3

5

3

0

DC 1 C DG 2 C DG 3 C DC 4 C DT 5 C DT 13 C DC 16
C DG 17 C DC 18 C FLQ 473 C

9

2.38

2.47

35.6

-2.00

-0.43

28.1

78

7

4

2

3

2

1

0

10

1.45

1.48

40.2

-0.70

-0.39

9.6

82

2

2

3

2

3

0

0

DC 15 D DC 16 D DG 17 D DC 18 D

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.