spacer
spacer

PDBsum entry 2f4x

Go to PDB code: 
Top Page dna_rna tunnels links
Tunnel analysis for: 2f4x calculated with MOLE 2.0 PDB id
2f4x
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
8 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.59 20.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  6 C A,7 U A,8 G A,11 G A,12 C A,13 G A,14 C A,15
G A,16 C A,17 A A,35 G B,36 C B
2 1.58 20.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  11 G A,12 C A,30 C B,31 U B,32 G B,35 G B,36 C B,
37 G B,38 C B,39 G B,40 C B,41 A B
3 1.61 24.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  5 G A,7 U A,8 G A,11 G A,12 C A,13 G A,14 C A,15
G A,16 C A,17 A A,35 G B,36 C B
4 1.58 25.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  11 G A,12 C A,29 G B,31 U B,32 G B,35 G B,36 C B,
37 G B,38 C B,39 G B,40 C B,41 A B
5 1.59 31.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  3 U A,4 U A,5 G A,6 C A,7 U A,8 G A,11 G A,12 C A,
13 G A,14 C A,15 G A,16 C A,17 A A,18 C A,35 G B,
36 C B
6 1.60 32.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  11 G A,12 C A,27 U B,28 U B,29 G B,30 C B,31 U B,
32 G B,35 G B,36 C B,37 G B,38 C B,39 G B,40 C B,
41 A B,42 C B
7 1.57 39.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  11 G A,12 C A,25 G B,26 G B,27 U B,28 U B,29 G B,
30 C B,31 U B,32 G B,35 G B,36 C B,37 G B,38 C B,
39 G B,40 C B,41 A B,42 C B,43 G B
8 1.60 41.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  1 G A,2 G A,3 U A,4 U A,5 G A,6 C A,7 U A,8 G A,
11 G A,12 C A,13 G A,14 C A,15 G A,16 C A,17 A A,
18 C A,19 G A,20 G A,22 A A,35 G B,36 C B

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
spacer
spacer