PDBsum entry 2f3m

Pore analysis for: 2f3m calculated with

MOLE 2.0

PDB id

2f3m

Pores calculated on whole structure

Pores calculated excluding ligands

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without HETATM:

3 pores, coloured by radius

6 pores, coloured by radius

6 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.32

2.26

27.9

-0.48

0.36

15.9

78

4

1

1

4

2

1

0

GTD 3218 C

2

1.35

2.30

28.1

-0.42

0.37

13.3

80

3

1

1

4

2

1

0

GTD 5218 E

3

3.98

4.91

34.0

-0.40

0.14

7.9

77

4

0

2

6

2

1

0

GTD 3218 C

4

1.45

2.23

37.4

-0.31

0.33

6.5

85

2

1

3

5

2

1

0

GTD 5218 E

5

1.51

1.84

56.3

-2.53

-0.57

25.4

81

5

3

2

1

0

2

0

6

1.16

1.35

157.4

-1.68

-0.24

23.1

81

16

12

11

13

4

2

3

GTD 5218 E

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.