PDBsum entry 2ekd Go to PDB code:  Pore analysis for: 2ekd calculated with MOLE 2.0 PDB id 2ekd Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 pores, coloured by radius 5 pores, coloured by radius 5 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.81 1.95 33.8 0.26 0.11 11.6 83 3 2 3 5 2 0 0  MSE 75 A MSE 137 A 2 1.16 2.57 36.6 0.12 0.31 10.0 81 2 2 2 8 4 1 0  MSE 75 B 3 1.32 2.85 32.4 -0.57 0.25 11.0 78 3 3 3 6 4 1 0  MSE 137 D 4 1.18 2.28 34.8 -0.32 0.47 9.8 79 3 2 3 5 4 0 0  MSE 137 C 5 1.07 1.31 25.4 1.05 0.39 11.6 83 2 2 2 6 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.