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PDBsum entry 2eim

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Pore analysis for: 2eim calculated with MOLE 2.0 PDB id
2eim
Pores calculated on whole structure Pores calculated excluding ligands

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19 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.61 1.66 44.7 -0.53 -0.28 16.1 88 3 2 1 5 0 1 0  PGV 1524 N
2 1.20 1.40 45.5 -2.03 -0.42 25.8 80 3 6 2 2 2 2 0  CDL 1269 T
3 1.51 1.50 46.6 -1.05 -0.38 13.2 79 3 3 3 1 4 2 0  TGL 1523 N
4 2.33 3.29 49.1 -1.69 -0.36 16.8 78 4 5 2 1 4 2 0  
5 1.28 2.66 53.9 1.78 0.73 1.9 71 0 1 2 13 7 2 0  TGL 1522 N
6 1.84 1.84 58.7 -0.69 -0.22 16.1 79 7 3 2 5 2 1 0  PGV 524 A TGL 523 D
7 1.70 2.08 60.2 -0.93 -0.32 11.9 75 3 4 3 2 3 4 1  
8 1.43 1.71 61.5 -1.13 -0.34 15.8 81 2 5 5 5 2 4 0  
9 1.49 1.50 63.6 -1.46 -0.41 18.2 84 6 5 3 2 4 0 0  TGL 1523 N
10 1.16 1.49 64.8 -1.77 -0.53 18.3 80 4 6 5 3 3 4 0  PGV 1268 P
11 1.19 1.47 65.7 -1.47 -0.59 12.6 85 5 4 5 2 2 3 0  PGV 268 C PGV 1268 P
12 2.33 2.72 69.7 -1.62 -0.63 17.1 82 7 7 6 2 1 5 0  PGV 268 C PGV 1268 P
13 1.50 1.49 70.9 -1.67 -0.52 22.5 88 7 9 2 3 2 0 0  PGV 1524 N
14 1.40 1.53 72.5 -0.02 0.20 12.6 66 5 4 1 6 12 2 0  TGL 522 L
15 1.30 1.39 74.5 -0.19 -0.09 7.8 74 2 4 5 8 10 3 1  TGL 1522 N
16 1.16 1.48 81.5 -1.21 -0.42 11.4 88 3 4 8 6 3 3 0  PGV 1268 P
17 1.47 1.76 84.0 -1.14 -0.53 10.9 88 5 6 8 4 1 4 0  PGV 268 C PGV 1268 P
18 1.12 3.17 86.2 0.65 0.35 9.7 73 5 3 1 13 9 4 0  HEA 515 A PGV 524 A TGL 523 D TGL 522 L
19 1.25 1.52 93.9 -0.29 0.20 9.5 76 6 4 6 12 10 2 1  PEK 265 C CDL 269 G CHD 1604 N PGV 1268 P CHD
1525 P
20 1.40 1.48 99.0 -0.67 -0.29 13.6 80 6 9 4 9 8 1 1  TGL 1522 N PGV 1524 N
21 2.46 3.36 101.6 -0.46 -0.02 9.4 74 6 5 6 10 8 3 2  PEK 265 C PGV 268 C CDL 269 G CHD 1604 N PGV 1268
P CHD 1525 P
22 1.97 2.10 109.5 -0.69 0.05 12.3 77 6 7 9 10 9 4 1  CHD 525 A CHD 1086 B PGV 268 C PEK 1265 P CDL
1269 T
23 2.44 2.74 114.4 -0.20 0.08 15.3 76 4 7 2 14 4 4 0  PEK 265 C CDL 269 G CHD 1604 N
24 1.40 1.70 118.7 0.40 0.20 8.4 81 3 5 4 17 4 3 0  PEK 265 C CDL 269 G CHD 1604 N
25 1.87 3.36 127.7 1.58 0.75 7.5 81 8 4 2 31 13 1 0  HEA 515 N HEA 516 N TGL 1522 N PSC 1230 O
26 1.33 1.51 136.6 -0.13 -0.09 10.1 83 7 5 6 15 3 4 0  PGV 268 C
27 1.34 1.34 188.4 -0.29 -0.01 12.1 74 9 11 10 23 16 4 0  PGV 524 A FME 1 B TGL 523 D DMU 526 M
28 1.19 1.19 194.3 -0.37 0.15 13.4 76 12 8 9 19 17 3 0  FME 1 B PSC 230 B TGL 521 B
29 1.11 1.06 206.3 -0.21 0.04 12.8 77 10 9 9 21 13 4 0  FME 1 B TGL 521 B CDL 1269 T
30 1.17 1.36 208.0 0.04 0.17 10.7 77 13 10 10 29 16 2 2  PGV 524 A CHD 1086 B PEK 265 C PGV 268 C TGL 523
D CDL 269 G CHD 1604 N PEK 1265 P PGV 1268 P CDL
1269 T

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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