PDBsum entry 2eck

Tunnel analysis for: 2eck calculated with

MOLE 2.0

PDB id

2eck

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

4 tunnels, coloured by tunnel radius

4 tunnels, coloured by tunnel radius

4 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.26

2.01

37.9

-0.17

0.05

15.1

82

4

2

1

8

1

1

0

AMP 215 A

2

1.32

1.36

38.4

-1.27

-0.30

22.8

84

6

2

1

5

1

1

0

AMP 215 A ADP 216 A

3

1.33

1.37

38.7

-1.35

-0.37

22.6

86

5

2

1

7

1

1

0

AMP 215 A ADP 216 A

4

1.33

1.33

41.2

-1.17

-0.23

20.6

82

6

1

1

4

2

2

0

AMP 215 A ADP 216 A

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.