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PDBsum entry 2e9r

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Top Page protein dna_rna ligands metals tunnels links
Tunnel analysis for: 2e9r calculated with MOLE 2.0 PDB id
2e9r
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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8 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.13 2.46 23.5 0.56 0.43 11.5 71 1 2 0 6 2 2 0  
2 1.15 2.52 25.6 1.67 0.63 6.8 70 1 0 0 6 2 2 0  DG 915 B
3 1.20 1.31 26.0 1.40 0.65 5.9 76 2 0 1 4 4 1 0  
4 1.12 2.87 21.9 2.40 0.99 0.6 72 0 0 0 7 6 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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