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PDBsum entry 2e76

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Top Page protein ligands metals Protein-protein interface(s) links
Photosynthesis PDB id
2e76
Contents
Protein chains
215 a.a.
160 a.a.
288 a.a.
168 a.a.
32 a.a.
32 a.a.
37 a.a.
29 a.a.
Ligands
HEM ×4
OPC ×2
UMQ ×4
CLA
TDS ×2
FES
SQD
BCR
Metals
_CD
Waters ×5
procheck   Generate full PROCHECK analyses

PROCHECK summary for 2e76

Ramachandran plot

PROCHECK statistics

1. Ramachandran Plot statistics


                                         No. of
                                        residues     %-tage
                                         ------      ------
Most favoured regions      [A,B,L]          550       68.9%** 
Additional allowed regions [a,b,l,p]        209       26.2%          
Generously allowed regions [~a,~b,~l,~p]     32        4.0%          
Disallowed regions         [XX]               7        0.9%*  
                                           ----      ------
Non-glycine and non-proline residues        798      100.0%

End-residues (excl. Gly and Pro)             17

Glycine residues                             84
Proline residues                             62
                                           ----
Total number of residues                    961


Based on an analysis of 118 structures of resolution of at least 2.0 Angstroms and R-factor no greater than 20.0 a good quality model would be expected to have over 90% in the most favoured regions [A,B,L].


2. G-Factors

                                                Average
Parameter                            Score       Score
---------                            -----       -----
Dihedral angles:-
     Phi-psi distribution            -1.26**
     Chi1-chi2 distribution          -1.42**
     Chi1 only                       -0.38      
     Chi3 & chi4                      0.26      
     Omega                           -1.31**
                                                  -1.11**
                                                  =====
Main-chain covalent forces:-
     Main-chain bond lengths         -0.84*     
     Main-chain bond angles          -1.43**
                                                  -1.18**
                                                  =====

     OVERALL AVERAGE                              -1.12**
                                                  =====

G-factors provide a measure of how unusual, or out-of-the-ordinary, a property is.

Values below -0.5*  - unusual
Values below -1.0** - highly unusual
Important note: The main-chain bond-lengths and bond angles are compared with the Engh & Huber (1991) ideal values derived from small-molecule data. Therefore, structures refined using different restraints may show apparently large deviations from normality.

 

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