PDBsum entry 2dxv

Tunnel analysis for: 2dxv calculated with

MOLE 2.0

PDB id

2dxv

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

View options

MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

5 tunnels, coloured by tunnel radius

9 tunnels, coloured by tunnel radius

9 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.68

1.67

21.5

0.38

-0.12

6.1

89

1

1

1

5

1

1

0

SAH 1300 A SO4 1303 A

2

1.14

1.22

22.1

-0.16

-0.25

4.5

84

1

0

1

4

1

2

0

SAH 1300 A

3

1.52

1.60

25.7

0.32

0.02

6.5

86

2

1

1

5

2

1

0

SAH 1300 A SO4 1303 A

4

1.13

1.25

26.4

-0.35

-0.19

4.8

81

2

0

1

4

2

2

0

SAH 1300 A

5

1.28

1.35

19.4

0.55

0.17

1.8

80

0

0

1

5

1

2

0

6

1.29

1.37

20.4

0.14

0.04

1.9

83

0

0

1

4

1

2

0

7

1.49

1.55

29.3

0.71

0.25

3.2

84

1

0

2

6

3

1

0

SO4 1307 B

8

1.56

1.58

30.6

0.47

-0.02

2.9

88

1

0

3

4

3

1

0

SO4 1307 B

9

1.32

1.32

22.2

-0.88

-0.27

15.7

79

2

2

1

2

0

2

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.