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PDBsum entry 2dw7

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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 2dw7 calculated with MOLE 2.0 PDB id
2dw7
Pores calculated on whole structure Pores calculated excluding ligands

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22 pores, coloured by radius 19 pores, coloured by radius 19 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 4.45 4.45 25.9 -2.35 -0.51 30.4 82 3 4 2 2 0 1 0  
2 3.06 3.49 30.3 -1.60 -0.37 25.8 88 3 4 2 3 0 0 0  
3 4.45 4.45 31.5 -1.52 -0.51 23.1 84 3 3 3 3 0 1 0  
4 3.39 3.56 34.9 -1.75 -0.50 25.3 82 4 5 2 2 0 1 0  
5 4.42 4.41 35.5 -2.16 -0.45 26.2 77 4 5 1 2 0 3 0  
6 1.83 3.27 36.6 -1.92 -0.59 26.0 78 5 5 1 1 0 1 0  
7 3.28 3.37 42.8 -1.63 -0.52 24.4 91 3 4 5 4 0 0 0  
8 1.84 2.06 43.0 -1.92 -0.34 32.2 77 7 5 0 4 0 3 0  
9 3.27 3.36 46.2 -1.78 -0.51 26.4 88 4 6 4 3 0 0 0  
10 1.70 1.69 56.8 -2.19 -0.57 27.6 87 10 5 1 6 0 0 0  
11 1.92 2.90 63.5 -1.18 -0.28 16.6 81 5 6 4 4 2 5 0  
12 1.84 3.50 64.9 -1.87 -0.52 20.1 86 6 4 3 2 2 3 0  
13 1.73 1.71 67.5 -1.56 -0.52 20.6 84 6 4 1 5 0 3 0  
14 2.51 2.68 75.3 -1.89 -0.55 22.8 83 5 8 5 3 2 3 0  
15 1.77 1.96 78.2 -1.75 -0.21 21.7 84 10 5 2 7 3 0 0  
16 1.33 2.04 91.0 -1.86 -0.39 27.0 85 9 7 4 8 1 0 0  
17 1.86 2.91 109.3 -1.29 -0.44 17.5 81 9 8 4 9 2 3 0  
18 1.81 2.87 126.4 -1.38 -0.32 23.3 80 13 10 4 13 1 4 0  
19 1.64 1.96 33.9 -1.45 -0.39 22.6 82 4 3 3 3 1 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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