 |
PDBsum entry 2dw7
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 2dw7 calculated with MOLE 2.0
|
PDB id
|
|
|
|
2dw7
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Pores calculated on whole structure |
 |
Pores calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
22 pores,
coloured by radius |
 |
19 pores,
coloured by radius
|
19 pores,
coloured as in list below
|
|
|
 |
 |
 |
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
4.45 |
4.45 |
25.9 |
-2.35 |
-0.51 |
30.4 |
82 |
 |
3 |
4 |
2 |
2 |
0 |
1 |
0 |
 |
|
 |
 |
2 |
 |
3.06 |
3.49 |
30.3 |
-1.60 |
-0.37 |
25.8 |
88 |
3 |
4 |
2 |
3 |
0 |
0 |
0 |
|
 |
3 |
 |
4.45 |
4.45 |
31.5 |
-1.52 |
-0.51 |
23.1 |
84 |
3 |
3 |
3 |
3 |
0 |
1 |
0 |
|
 |
4 |
 |
3.39 |
3.56 |
34.9 |
-1.75 |
-0.50 |
25.3 |
82 |
4 |
5 |
2 |
2 |
0 |
1 |
0 |
|
 |
5 |
 |
4.42 |
4.41 |
35.5 |
-2.16 |
-0.45 |
26.2 |
77 |
4 |
5 |
1 |
2 |
0 |
3 |
0 |
|
 |
6 |
 |
1.83 |
3.27 |
36.6 |
-1.92 |
-0.59 |
26.0 |
78 |
5 |
5 |
1 |
1 |
0 |
1 |
0 |
|
 |
7 |
 |
3.28 |
3.37 |
42.8 |
-1.63 |
-0.52 |
24.4 |
91 |
3 |
4 |
5 |
4 |
0 |
0 |
0 |
|
 |
8 |
 |
1.84 |
2.06 |
43.0 |
-1.92 |
-0.34 |
32.2 |
77 |
7 |
5 |
0 |
4 |
0 |
3 |
0 |
|
 |
9 |
 |
3.27 |
3.36 |
46.2 |
-1.78 |
-0.51 |
26.4 |
88 |
4 |
6 |
4 |
3 |
0 |
0 |
0 |
|
 |
10 |
 |
1.70 |
1.69 |
56.8 |
-2.19 |
-0.57 |
27.6 |
87 |
10 |
5 |
1 |
6 |
0 |
0 |
0 |
|
 |
11 |
 |
1.92 |
2.90 |
63.5 |
-1.18 |
-0.28 |
16.6 |
81 |
5 |
6 |
4 |
4 |
2 |
5 |
0 |
|
 |
12 |
 |
1.84 |
3.50 |
64.9 |
-1.87 |
-0.52 |
20.1 |
86 |
6 |
4 |
3 |
2 |
2 |
3 |
0 |
|
 |
13 |
 |
1.73 |
1.71 |
67.5 |
-1.56 |
-0.52 |
20.6 |
84 |
6 |
4 |
1 |
5 |
0 |
3 |
0 |
|
 |
14 |
 |
2.51 |
2.68 |
75.3 |
-1.89 |
-0.55 |
22.8 |
83 |
5 |
8 |
5 |
3 |
2 |
3 |
0 |
|
 |
15 |
 |
1.77 |
1.96 |
78.2 |
-1.75 |
-0.21 |
21.7 |
84 |
10 |
5 |
2 |
7 |
3 |
0 |
0 |
|
 |
16 |
 |
1.33 |
2.04 |
91.0 |
-1.86 |
-0.39 |
27.0 |
85 |
9 |
7 |
4 |
8 |
1 |
0 |
0 |
|
 |
17 |
 |
1.86 |
2.91 |
109.3 |
-1.29 |
-0.44 |
17.5 |
81 |
9 |
8 |
4 |
9 |
2 |
3 |
0 |
|
 |
18 |
 |
1.81 |
2.87 |
126.4 |
-1.38 |
-0.32 |
23.3 |
80 |
13 |
10 |
4 |
13 |
1 |
4 |
0 |
|
 |
19 |
 |
1.64 |
1.96 |
33.9 |
-1.45 |
-0.39 |
22.6 |
82 |
4 |
3 |
3 |
3 |
1 |
0 |
0 |
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |