PDBsum entry 2dsa

Pore analysis for: 2dsa calculated with

MOLE 2.0

PDB id

2dsa

Pores calculated on whole structure

Pores calculated excluding ligands

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13 pores, coloured by radius

13 pores, coloured by radius

13 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.95

2.19

27.8

-1.87

-0.06

25.3

77

2

3

4

3

3

0

0

2

2.52

2.76

33.4

-1.33

-0.23

9.6

87

5

0

9

2

2

2

0

GSH 3224 C HPX 3225 C GSH 4224 D HPX 4225 D

3

2.81

2.81

34.0

-2.12

-0.30

23.9

75

2

4

4

1

3

1

0

4

2.04

2.13

39.9

-1.61

-0.74

9.3

83

0

5

8

2

1

4

0

5

2.09

2.09

40.4

-1.59

-0.71

9.2

84

0

6

7

2

1

3

0

6

1.54

1.54

43.8

-1.71

-0.80

8.7

81

0

6

7

2

1

4

0

7

2.28

2.28

44.1

-1.60

-0.57

16.3

79

2

4

5

0

2

2

0

8

1.48

1.49

46.1

-1.65

-0.77

8.7

83

1

7

7

2

1

3

0

9

2.04

2.14

49.6

-1.74

-0.76

8.7

80

0

5

7

3

1

4

0

10

2.16

2.16

53.5

-1.55

-0.56

14.8

82

2

4

6

2

2

3

0

11

2.86

3.15

54.0

-2.19

-0.22

27.1

77

5

3

3

2

3

1

0

12

3.30

4.19

57.9

-1.78

-0.30

20.1

84

7

0

5

3

2

1

0

GSH 3224 C HPX 3225 C

13

2.78

2.80

98.6

-1.76

-0.43

19.8

83

6

3

8

2

2

2

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.