PDBsum entry 2drd

Pore analysis for: 2drd calculated with

MOLE 2.0

PDB id

2drd

Pores calculated on whole structure

Pores calculated excluding ligands

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18 pores, coloured by radius

15 pores, coloured by radius

15 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

2.20

2.25

28.8

-1.12

-0.81

9.6

97

0

3

5

1

0

1

0

2

1.88

2.19

36.3

-0.59

-0.21

9.8

71

1

1

1

5

2

2

0

3

1.45

1.46

54.0

-1.23

-0.52

6.3

90

1

2

9

2

1

4

0

MIY 2001 A

4

1.47

1.47

54.9

-0.89

-0.25

9.2

83

2

3

9

3

4

2

0

MIY 2001 A

5

1.23

1.35

62.1

-1.22

-0.44

13.2

87

4

4

13

7

1

2

0

MIY 2001 A

6

1.67

1.81

64.7

-0.94

-0.59

11.9

88

3

6

6

7

3

1

0

7

1.39

1.47

69.1

0.90

0.27

11.4

79

3

5

2

16

3

1

0

8

1.62

2.37

107.8

0.45

0.22

13.6

79

5

5

3

17

4

1

0

9

1.59

1.75

143.6

0.09

-0.06

9.8

83

6

4

8

18

8

1

0

10

1.21

1.30

164.5

0.59

0.18

7.4

83

5

3

8

25

8

0

0

11

1.22

2.19

172.1

0.50

0.18

13.3

82

8

7

7

29

5

0

0

12

1.81

1.83

184.7

1.02

0.34

6.7

82

5

3

8

29

8

2

0

13

1.63

1.83

191.4

0.21

-0.08

10.8

83

7

9

11

29

7

1

0

14

1.40

1.99

193.2

0.72

0.25

11.9

81

9

6

6

29

8

0

0

15

1.30

1.51

212.3

0.57

0.10

8.8

83

6

8

11

36

7

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.