spacer
spacer

PDBsum entry 2dr2

Go to PDB code: 
Top Page protein dna_rna ligands pores links
Pore analysis for: 2dr2 calculated with MOLE 2.0 PDB id
2dr2
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
6 pores, coloured by radius 6 pores, coloured by radius 6 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.75 1.75 42.8 -1.45 -0.67 10.0 86 2 0 2 0 0 1 0  G 10 B C 11 B U 27 B C 28 B U 29 B G 30 B A 31 B
C 32 B U 33 B A 36 B G 37 B U 39 B
2 2.08 2.08 48.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  U 5 B C 6 B G 7 B G 9 B C 11 B A 15 B G 46 B U 47
B U 48 B G 49 B C 50 B G 51 B U 52 B G 53 B G 57
B A 59 B U 60 B C 61 B A 62 B G 64 B
3 1.60 1.60 54.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  U 20 B A 21 B G 22 B C 23 B G 24 B G 26 B C 28 B
U 29 B G 30 B A 31 B C 32 B U 33 B A 36 B G 37 B
A 38 B U 39 B C 40 B A 41 B G 42 B A 43 B A 44 B
4 1.64 1.90 59.3 -0.82 -0.19 16.0 85 2 3 1 3 2 0 0  G 10 B C 11 B G 24 B C 25 B G 26 B
5 1.60 1.60 79.0 -0.51 -0.25 9.5 85 2 3 1 3 2 0 0  G 24 B C 25 B G 26 B C 28 B U 29 B G 30 B A 31 B
C 32 B U 33 B A 36 B G 37 B A 38 B U 39 B C 40 B
6 1.65 1.91 88.8 -0.42 -0.33 7.9 85 2 2 1 3 2 0 0  U 20 B A 21 B G 22 B C 23 B G 24 B C 25 B G 26 B
A 38 B U 39 B C 40 B A 41 B G 42 B A 43 B A 44 B

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer