PDBsum entry 2dqy Go to PDB code:  Tunnel analysis for: 2dqy calculated with MOLE 2.0 PDB id 2dqy Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.22 1.41 21.6 0.31 -0.11 7.9 60 3 3 2 4 5 1 0   2 1.15 1.33 26.6 -0.03 0.16 15.9 77 2 2 3 9 2 1 0   3 1.28 1.47 22.9 0.68 0.02 6.5 70 2 4 4 5 5 1 0   4 1.17 1.33 27.1 0.51 0.05 5.8 63 2 4 3 5 7 1 0   5 1.28 1.44 19.6 0.39 -0.05 9.9 67 1 5 3 4 4 1 0   6 1.58 1.58 27.2 -2.05 -0.36 13.0 78 2 1 3 1 1 3 0   7 1.56 3.45 27.2 -2.07 -0.37 13.5 78 2 1 3 1 1 3 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.