PDBsum entry 2dki

Tunnel analysis for: 2dki calculated with

MOLE 2.0

PDB id

2dki

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

6 tunnels, coloured by tunnel radius

7 tunnels, coloured by tunnel radius

7 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.21

1.21

25.7

-1.39

-0.42

13.1

77

2

1

5

2

2

1

0

2

1.21

1.22

26.0

-1.45

-0.46

12.6

78

2

1

6

1

2

4

0

3

1.22

1.23

34.3

-1.06

-0.38

16.4

76

3

2

3

3

2

1

0

4

1.19

1.20

41.6

-1.65

-0.47

23.4

77

6

5

3

3

2

1

0

SO4 641 A SO4 642 A

5

1.10

1.10

42.7

-0.98

-0.24

16.2

74

4

2

3

3

4

3

0

SO4 641 A

6

1.34

1.38

15.6

-0.35

-0.37

6.5

82

1

0

1

3

0

2

0

7

1.34

1.36

18.0

0.13

-0.39

6.0

84

1

1

1

3

0

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.