PDBsum entry 2dk4 Go to PDB code:  Tunnel analysis for: 2dk4 calculated with MOLE 2.0 PDB id 2dk4 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.55 2.71 15.4 -0.37 -0.31 10.8 70 1 2 0 3 0 1 0   2 1.36 1.43 22.1 -0.14 -0.17 16.4 77 2 2 0 4 0 0 0   3 1.16 1.16 22.5 -0.91 -0.43 8.7 73 1 1 1 3 0 2 0   4 1.46 1.66 24.0 0.02 -0.25 5.8 76 1 2 1 2 0 2 0   5 2.40 3.08 24.1 0.01 -0.12 10.8 79 1 2 1 3 0 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.