PDBsum entry 2dk0 Go to PDB code:  Tunnel analysis for: 2dk0 calculated with MOLE 2.0 PDB id 2dk0 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   1 tunnel, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.19 2.30 24.0 -0.18 0.29 18.7 75 5 4 1 6 2 0 0   2 1.18 2.38 30.5 -0.49 0.04 22.5 75 5 5 0 6 2 0 0   3 1.31 2.20 16.7 -1.32 -0.36 2.1 95 0 0 5 2 1 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.