PDBsum entry 2dgd Go to PDB code:  Pore analysis for: 2dgd calculated with MOLE 2.0 PDB id 2dgd Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 pores, coloured by radius 5 pores, coloured by radius 5 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.37 2.66 56.1 -1.02 -0.10 19.0 73 4 3 1 2 5 2 0  GOL 501 A 2 2.32 2.64 59.2 -1.01 -0.01 21.1 75 4 4 1 2 4 2 0  GOL 501 A 3 1.14 2.02 26.6 -2.06 -0.47 29.8 76 4 6 0 1 2 0 1   4 1.42 1.43 46.5 -1.72 -0.26 19.7 75 6 2 1 2 3 1 1  MSE 38 B 5 1.41 1.42 85.6 -1.77 -0.28 21.8 77 8 4 1 3 3 2 1  MSE 38 C Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.