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PDBsum entry 2dft
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Top Page protein ligands metals Protein-protein interface(s) links
Transferase PDB id
2dft
Contents
Protein chains
156 a.a.
165 a.a.
Ligands
ADP ×4
Metals
_MG ×4
_CL ×3
Waters ×260
procheck   Generate full PROCHECK analyses

PROCHECK summary for 2dft

Ramachandran plot

PROCHECK statistics

1. Ramachandran Plot statistics


                                         No. of
                                        residues     %-tage
                                         ------      ------
Most favoured regions      [A,B,L]          451       84.8%*  
Additional allowed regions [a,b,l,p]         71       13.3%          
Generously allowed regions [~a,~b,~l,~p]      4        0.8%          
Disallowed regions         [XX]               6        1.1%*  
                                           ----      ------
Non-glycine and non-proline residues        532      100.0%

End-residues (excl. Gly and Pro)             11

Glycine residues                             74
Proline residues                             24
                                           ----
Total number of residues                    641

Based on an analysis of 118 structures of resolution of at least 2.0 Angstroms and R-factor no greater than 20.0 a good quality model would be expected to have over 90% in the most favoured regions [A,B,L].

2. G-Factors

                                                Average
Parameter                            Score       Score
---------                            -----       -----
Dihedral angles:-
     Phi-psi distribution            -0.56*     
     Chi1-chi2 distribution          -0.83*     
     Chi1 only                       -0.05      
     Chi3 & chi4                      0.22      
     Omega                           -1.34**
                                                  -0.72*     
                                                  =====
Main-chain covalent forces:-
     Main-chain bond lengths         -0.31      
     Main-chain bond angles          -1.50**
                                                  -1.00*     
                                                  =====

     OVERALL AVERAGE                              -0.80*     
                                                  =====

G-factors provide a measure of how unusual, or out-of-the-ordinary, a property is. 

Values below -0.5*  - unusual
Values below -1.0** - highly unusual
Important note: The main-chain bond-lengths and bond angles are compared with the Engh & Huber (1991) ideal values derived from small-molecule data. Therefore, structures refined using different restraints may show apparently large deviations from normality.

 

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