PDBsum entry 2ddd Go to PDB code:  Tunnel analysis for: 2ddd calculated with MOLE 2.0 PDB id 2ddd Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.26 1.77 17.0 -2.14 -0.55 32.7 79 3 4 0 3 0 0 0   2 1.27 1.75 17.3 -1.43 -0.46 25.9 82 2 3 1 3 0 0 0   3 1.27 1.70 18.5 -1.76 -0.59 26.9 82 2 3 1 3 0 0 0   4 1.35 1.35 30.7 0.06 -0.08 10.4 82 2 3 3 7 2 0 0  CR8 64 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.