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PDBsum entry 2dab

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Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 2dab calculated with MOLE 2.0 PDB id
2dab
Pores calculated on whole structure Pores calculated excluding ligands

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8 pores, coloured by radius 7 pores, coloured by radius 7 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.44 1.46 27.6 -1.23 -0.26 16.3 85 4 0 3 4 2 0 0  PLP 285 A
2 1.16 1.49 38.8 -0.36 -0.04 17.3 78 6 2 0 8 1 0 0  PLP 285 A
3 1.14 1.47 40.1 -0.57 -0.04 14.7 83 5 1 3 9 2 0 0  PLP 285 A
4 1.15 1.15 53.3 -0.72 0.06 12.7 80 7 2 5 8 4 0 1  PLP 285 B
5 1.43 1.44 57.9 -1.23 -0.10 15.7 77 9 2 5 7 4 0 2  PLP 285 A PLP 285 B
6 1.21 1.19 99.1 -0.69 -0.04 14.8 80 6 5 3 8 2 2 0  
7 1.34 1.34 100.8 -1.23 -0.16 19.6 79 9 5 3 7 2 0 1  PLP 285 A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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