PDBsum entry 2d9q Go to PDB code:  Tunnel analysis for: 2d9q calculated with MOLE 2.0 PDB id 2d9q Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   1 tunnel, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.76 4.69 23.1 -1.36 -0.17 20.1 77 3 2 2 5 1 1 0   2 1.76 4.54 25.2 -1.26 -0.27 19.6 79 2 2 2 6 1 1 0   3 1.31 1.31 15.4 -0.18 -0.16 5.0 77 0 1 0 1 1 3 0   4 1.31 1.31 17.5 0.02 -0.13 12.2 91 2 0 1 4 0 0 0   5 1.19 1.46 19.5 -0.19 -0.12 14.4 89 2 1 1 4 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.