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PDBsum entry 2d98
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Tunnel analysis for: 2d98 calculated with  MOLE 2.0
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PDB id
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2d98
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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2 tunnels,
coloured by tunnel radius |
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4 tunnels,
coloured by
tunnel radius
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4 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.19 |
1.19 |
19.6 |
-1.26 |
-0.64 |
6.9 |
87 |
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0 |
1 |
2 |
1 |
1 |
1 |
0 |
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IYR 73 A IYR 96 A
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2 |
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1.19 |
1.19 |
20.3 |
-1.86 |
-0.30 |
16.2 |
80 |
1 |
1 |
4 |
1 |
3 |
1 |
0 |
IYR 73 A IYR 96 A IYR 179 A
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3 |
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1.20 |
1.20 |
26.3 |
-1.75 |
-0.13 |
14.3 |
73 |
1 |
3 |
4 |
2 |
5 |
2 |
0 |
IYR 73 A
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4 |
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1.21 |
1.21 |
27.8 |
-0.95 |
0.21 |
10.4 |
75 |
0 |
2 |
4 |
3 |
6 |
2 |
0 |
IYR 73 A TYI 171 A
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program