PDBsum entry 2d4z Go to PDB code:  Pore analysis for: 2d4z calculated with MOLE 2.0 PDB id 2d4z Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 pores, coloured by radius 4 pores, coloured by radius 4 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.07 1.59 33.1 -0.25 -0.04 7.7 80 1 0 2 5 3 0 0   2 1.63 1.63 37.7 -1.90 -0.68 13.5 85 2 2 5 3 1 0 0   3 1.05 1.41 100.4 -0.31 0.06 13.9 78 3 3 4 8 4 1 0   4 1.32 1.94 105.1 -0.43 -0.20 10.4 77 2 3 5 7 4 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.