PDBsum entry 2d4y Go to PDB code:  Tunnel analysis for: 2d4y calculated with MOLE 2.0 PDB id 2d4y Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.28 1.34 23.1 -2.25 -0.63 27.3 90 4 3 2 1 0 0 0   2 1.30 1.33 36.7 -2.17 -0.60 27.6 89 5 5 3 3 0 0 0   3 1.13 1.59 36.7 -0.66 -0.23 7.3 79 2 0 5 6 3 0 0   4 1.18 1.57 16.3 -2.25 -0.55 11.7 87 2 0 4 1 1 0 0   5 1.32 1.60 17.3 -1.61 -0.34 17.3 88 2 1 3 2 1 0 0   6 1.07 1.52 18.4 0.39 -0.28 5.3 84 2 1 1 4 0 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.