PDBsum entry 2d3i Go to PDB code:  Tunnel analysis for: 2d3i calculated with MOLE 2.0 PDB id 2d3i Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.05 1.97 41.5 -0.96 -0.45 18.4 84 3 5 2 7 0 2 0   2 1.25 2.08 21.7 0.89 0.28 8.7 85 1 2 1 7 2 0 0   3 1.53 1.64 18.9 -0.15 0.13 14.8 82 2 1 1 6 1 0 0   4 1.52 1.52 15.8 -2.25 -0.63 31.0 85 2 2 1 1 0 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.