PDBsum entry 2d2q Go to PDB code:  Tunnel analysis for: 2d2q calculated with MOLE 2.0 PDB id 2d2q Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.30 1.30 22.3 -0.81 -0.27 8.7 81 1 1 4 4 3 0 0   2 1.32 1.67 25.3 -0.89 -0.34 8.2 82 2 1 4 5 3 0 0   3 1.30 1.30 38.5 0.45 0.01 2.6 78 0 1 3 7 4 0 0   4 1.34 1.64 41.6 0.29 -0.05 2.8 79 1 1 3 8 4 0 0   5 1.20 2.72 23.4 2.83 1.21 2.5 74 2 0 1 8 3 0 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.