PDBsum entry 2d2c Go to PDB code:  Tunnel analysis for: 2d2c calculated with MOLE 2.0 PDB id 2d2c Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   0 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.28 1.50 39.3 0.68 0.35 5.5 69 2 0 0 7 8 1 0  HEM 301 A 2 1.29 1.51 50.1 -1.25 -0.01 21.6 75 4 4 1 8 5 1 0  HEM 301 A BNT 309 B 3 1.27 1.53 51.2 -0.55 -0.01 15.6 77 5 4 0 11 6 1 0  HEM 301 A BNT 309 B 4 1.30 1.51 53.8 0.47 0.22 10.6 79 3 1 0 13 4 2 0  HEM 301 A CLA 201 B 5 1.28 1.50 57.4 -0.55 -0.11 17.5 79 5 5 1 14 4 1 0  HEM 301 A BNT 309 B 6 1.28 1.53 57.4 1.11 0.45 8.8 82 3 1 1 19 4 4 0  HEM 301 A CLA 201 B 7 1.32 1.54 64.7 -0.18 0.17 14.2 77 4 4 0 14 6 1 0  HEM 301 A BNT 309 B 8 1.35 1.54 83.6 0.37 0.22 10.3 79 9 1 2 18 9 2 0  HEM 301 A HEM 302 A CLA 201 B 9 1.24 1.27 105.7 0.26 0.24 11.2 77 9 2 2 22 7 5 0  HEM 301 A HEM 302 A HEC 303 A CLA 201 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.