spacer
spacer

PDBsum entry 2clj

Go to PDB code: 
Top Page protein tunnels links
Tunnel analysis for: 2clj calculated with MOLE 2.0 PDB id
2clj
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.21 1.64 36.0 1.23 0.29 3.3 79 2 0 2 15 2 0 0  
2 1.21 1.64 40.9 1.40 0.27 3.5 78 1 0 3 16 2 0 1  
3 1.32 2.08 33.3 0.14 0.32 5.8 68 1 1 1 4 8 1 0  
4 1.24 1.51 16.1 -0.86 -0.33 11.9 80 2 1 0 3 0 1 0  
5 1.17 2.22 18.8 -0.24 -0.09 12.9 80 1 2 1 4 3 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer