PDBsum entry 2cjl Go to PDB code:  Tunnel analysis for: 2cjl calculated with MOLE 2.0 PDB id 2cjl Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.20 1.20 26.9 0.30 0.38 4.4 74 0 1 4 3 5 2 0   2 1.19 1.19 30.3 -0.05 0.15 6.6 79 0 3 6 4 4 1 0   3 1.20 1.20 23.8 0.54 0.45 4.2 73 0 1 3 2 4 1 0   4 1.20 1.20 29.7 0.17 0.22 3.5 74 0 1 4 2 5 1 0   5 1.22 1.22 30.8 -0.02 0.10 5.9 79 0 3 6 3 4 0 0   6 1.21 1.21 48.8 -0.79 -0.23 9.7 82 2 2 7 2 4 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.