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PDBsum entry 2cjj
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DNA binding protein
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PDB id
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2cjj
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References listed in PDB file
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Key reference
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Title
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Crystal structure of the myb domain of the rad transcription factor from antirrhinum majus.
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Authors
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C.E.Stevenson,
N.Burton,
M.M.Costa,
U.Nath,
R.A.Dixon,
E.S.Coen,
D.M.Lawson.
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Ref.
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Proteins, 2006,
65,
1041-1045.
[DOI no: ]
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PubMed id
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Note: In the PDB file this reference is
annotated as "TO BE PUBLISHED". The citation details given above have
been manually determined.
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Abstract
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No abstract given.
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Figure 1.
Figure 1. Stereo figure of the RAD fragment structure in ribbon
representation colored with respect to sequence, starting from
blue at the N-terminus through to red at the C-terminus. RAD is
shown docked onto a double-stranded DNA fragment based on a
superposition with the structure of the EH-DNA complex (PDB code
2HDD). The side chains of Trp 11, Trp 34, and Tyr 53 are also
shown.
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Figure 2.
Figure 2. Structure-based sequence alignment of RAD against
close structural homologues identified by DALI.[38] Only the
sequences of the polypeptides present in the PDB entries are
displayed. The positions of  -helices
are indicated by red shading and the locations of the W,W,W
motifs are boxed. EH has a Phe in the third position according
to the structural alignment, although the adjacent residue is a
Trp (also boxed). Residues showing large chemical shifts in
ARR10-B upon binding DNA are indicated with blue bars. Residues
that contact DNA in the crystal structure of EH are also shown
as bars: blue bars representing interactions with the phosphate
backbone and green bars indicating interactions with the DNA
bases.
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The above figures are
reprinted
by permission from John Wiley & Sons, Inc.:
Proteins
(2006,
65,
1041-1045)
copyright 2006.
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Secondary reference #1
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Title
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Crystallization and preliminary X-Ray analysis of the rad protein from antirrhinum majus.
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Authors
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C.E.Stevenson,
N.Burton,
M.Costa,
U.Nath,
R.A.Dixon,
E.S.Coen,
D.M.Lawson.
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Ref.
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Acta Crystallograph Sect F Struct Biol Cryst Commun, 2005,
61,
885-888.
[DOI no: ]
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PubMed id
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Figure 1.
Figure 1 Crystal of the A. majus RAD protein with approximate
dimensions of 250 × 150 × 150 µm.
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The above figure is
reproduced from the cited reference
which is an Open Access publication published by the IUCr
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