PDBsum entry 2cgo

Tunnel analysis for: 2cgo calculated with

MOLE 2.0

PDB id

2cgo

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

View options

MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

6 tunnels, coloured by tunnel radius

6 tunnels, coloured by tunnel radius

6 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.52

1.72

17.3

-1.06

-0.30

12.1

73

1

2

2

2

2

2

0

2

1.65

1.73

18.6

-0.70

0.02

13.7

71

1

1

2

3

3

2

0

3

1.52

1.71

21.7

-0.18

0.24

8.2

75

1

2

3

3

3

2

0

4

1.60

1.68

22.5

-0.24

0.26

12.3

76

1

1

3

4

3

2

0

5

1.60

1.68

25.4

-0.07

0.32

14.9

73

1

2

2

4

4

1

0

6

1.09

1.45

15.2

-1.86

-0.33

24.5

74

2

2

1

2

2

2

0

SO4 1355 A

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.