PDBsum entry 2cfd

Pore analysis for: 2cfd calculated with

MOLE 2.0

PDB id

2cfd

Pores calculated on whole structure

Pores calculated excluding ligands

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without HETATM:

8 pores, coloured by radius

12 pores, coloured by radius

12 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.22

1.46

27.6

0.02

-0.30

8.8

80

2

1

1

3

0

3

0

2

1.37

1.62

29.6

-0.01

-0.43

6.7

81

1

2

1

5

1

1

0

3

1.33

1.54

30.1

-0.34

-0.38

8.2

80

2

1

0

4

0

2

0

4

1.35

1.56

30.1

0.22

-0.42

3.4

88

0

1

2

6

0

1

0

5

1.45

1.53

36.6

-1.48

-0.43

24.1

77

4

5

1

3

4

0

0

6

1.33

1.57

46.5

-1.41

-0.52

19.9

82

3

6

2

5

3

0

0

7

1.33

1.56

47.7

-1.36

-0.37

18.0

79

4

4

3

5

5

0

0

8

1.06

1.45

61.2

-1.39

-0.22

19.9

76

7

5

2

6

5

1

0

TPQ 382 B R4A 705 B

9

1.42

2.32

89.4

-1.27

-0.07

20.2

75

9

8

3

7

7

1

0

TPQ 382 A R4A 705 A GOL 725 B

10

1.45

1.81

92.6

-1.30

-0.09

20.0

79

9

8

6

7

6

1

0

TPQ 382 B R4A 705 B GOL 725 B

11

1.23

1.29

107.3

-1.02

-0.49

17.3

89

7

6

3

9

1

2

0

12

1.40

2.28

113.5

-0.91

0.05

15.0

78

10

6

7

12

9

2

0

TPQ 382 A R4A 705 A TPQ 382 B R4A 705 B

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.